I don’t think it is radiation. Lots of cookers use some kind of diffuser disc and they all would radiate to some extent when heated. Clay, metal, sand etc. should not make any difference.
Because the Firedial has slots, the more likely explanation is that you are getting more convective heat flow up the center of the cooker to the bottom of the lower rack. With a water pan, pizza pan, clay saucer or any other solid diffuser, the hot air travels up the perimeter of the cylinder until it is past the diffuser. So the sides are hot and the center is cooler. See Chris' description below of the WSM "burn zone" below.
As you can see from Chris' temp tests below, the WSM lower rack generally runs cooler than the top when using a solid diffuser. One rationale for the FireDial is that it evens the heat out more between the lower and top rack. Meaning the bottom rack runs a bit hotter. It also is supposed to even out the heat side to side and so eliminate the burn zone going up the sides. I'd assume the Hunsaker Vortex diffuser would yield similar results.
Overall I like the FD a lot and have adapted my cooking to it. You save a lot of space and mess as compared to using the overly deep 18.5 water pan. Very fuel efficient. Makes the lower rack more use-able for cooking imo.
For brisket, I separate the point and flat. The thick fatty point can suck up a lot of heat, so that goes on the bottom rack. The lean flat that can dry out or get overdone goes on the top rack where it is further from the fire and where I can tend to it easier.
If you don't like the convection flow up the middle, just use some kind of soild diffuser. Or foil the FireDial to block the slots. That should make the bottom rack and the cooker center cooler than if the slots are open.
This article explains the "burn zone" in the Weber Smokey Mountain Cooker: Where it is, why it's there, and how you can avoid it.
www.virtualweberbullet.com
Temperature experiments conducted with the Weber Smokey Mountain Cooker, including empty pan, water in pan, and sand in pan. Charts and graphs included.
www.virtualweberbullet.com