I think the argument for SMD is cost, either for the DIY or commercial aspect (if Bryan chooses to sell some, which I think he could). The learning curve is steeper, but it's not THAT steep. An hour on youtube & an hour of practice and you can SMT solder. If you've never done through-hole, I think it should be suggested to learn both - with encouragement from the forum. I significantly cut the cost of my PCBs & components for another project by using 0603 resistors & LEDs (16channel relay boards). You can fit 2-3 0603 components in the same space as a single through-hole resistor.
I'm kicking around a 4.2-clone in SMD & on the beaglebone platform just to see if I can do it. I'm not great at electronics or software, so the HM project will be a road map & I'll try to solve the specific challenges on the BBB (which I'm slightly more familiar with than RPi). I want to miniaturize, customize, learn a few things & add my own touches to it. It won't be done soon, but it will get done. There's a few notes on paper right now & I have the schematics marked up w/what I want to use & what won't work w/BBB.
The HM project caused me to learn to create a PCB for my fireworks controller project, I would have never done that w/o Bryan's EXCELLENT documentation, support & well-done project (perhaps juicy medium rare is a better compliment for the HM?). This forum + github + the professional manner in which he goes about things are a how-to for DIY electronic projects, IMO.